What's New

0.3.0 - 27 April 2024

User-facing changes

• Improved Resfinder mappings (40 gene clusters and 9 reverse complements were manually curated)
• Updated ARG-ANNOT mappings (a total of 10 mappings changed)
• argNorm is now more usable as a library
• Remove warnings

Internal changes

• Code has been refactored to be simpler

0.2.0 - 26 March 2024

ARO Mapping & Normalization

• Updated mappings and manual curation tables for latest RGI
• Hamronized ResFinderFG support
• Removed python syntax in output

Drug Categorization

• Improved drug categorization by using superclasses whenever direct drug categorization is not possible
• Added better column headings for drug categorization (confers_resistance_to and resistance_to_drug_class)

Internal Improvements: Testing

• Improved pytest testing
• Added integration tests

0.1.0 - 20 December, 2023

• Added hamronized support for AMRFinderPlus
• Fixed ARO:nan issue (added manually curated mapping tables and integrated it with normalizers)
• Added drug categorization feature and integrated it with normalizers
• Added AMRFinderPlusNormalizer, ResFinderNormalizer
• Added specific smoke tests for ARGSOAPNormalizer, DeepARGNormalizer, AbricateNormalizer, AMRFinderPlusNormalizer and ResFinderNormalizer

0.0.1 - 13 June, 2022

• First release
• Initial source code started
• Normalizers: added BaseNormalizer, ARGSOAPNormalizer, DeepARGNormalizer, AbricateNormalizer
• Testing: added basic ARO column test